nailpolish summary

Quickly review the quality and duplicate rate of the dataset. The reads must first have been indexed.

Usage

$ nailpolish summary --help
Generate a summary of duplicate statistics from an index file

Usage: nailpolish summary [OPTIONS] <INPUT>

Arguments:
  <INPUT>  Input .fastq file

Options:
  -o, --output <OUTPUT>  Output .html file. By default, will write to <file>.summary.html
  -h, --help             Print help

Output

See an example summary output file.